deep.heatmap: Creates an annotated heatmap from DeepTools multiBamSummary...
In AmyOlex/RNASeqBits: Short Scripts to Support RNA-Seq Data Analysis in R
deep.heatmap R Documentation
Creates an annotated heatmap from DeepTools multiBamSummary tab delimited output.
Description
This function dreated a heatmap from the DeepTools multiBamSummary method, and adds color coded annotation bars to the heatmap to annotation samples.
The file is formatted with the following fields: #'chr' 'start' 'end' 'sample1_name.bam' 'sample2_name.bam' ... 'sampleN_name.bam'
Usage
deep.heatmap(deep_file, annot_file, outfile_name = "image.jpg",
plot_title = "")
Arguments
deep_file
The path and name of the file containing the DeepTools tab delimited results from the multiBamSummary method.
annot_file
The path and file name of the tab delimited text file containing the sample annotations to use for adding colored annotation bars on the heatmap.
Value
A data frame of bin counts from the multiBamSummary output, and a data frame with annotations.
Author(s)
Amy L. Olex alolex@vcu.edu
Examples
data <- deep.heatmap(deep_file="counts.tab", annot_file="annots.txt", image_name="Plot Title")
AmyOlex/RNASeqBits documentation built on Jan. 26, 2024, 7:08 a.m.
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| deep.heatmap | R Documentation |
Creates an annotated heatmap from DeepTools multiBamSummary tab delimited output.
Description
This function dreated a heatmap from the DeepTools multiBamSummary method, and adds color coded annotation bars to the heatmap to annotation samples. The file is formatted with the following fields: #'chr' 'start' 'end' 'sample1_name.bam' 'sample2_name.bam' ... 'sampleN_name.bam'
Usage
deep.heatmap(deep_file, annot_file, outfile_name = "image.jpg",
plot_title = "")
Arguments
deep_file |
The path and name of the file containing the DeepTools tab delimited results from the multiBamSummary method. |
annot_file |
The path and file name of the tab delimited text file containing the sample annotations to use for adding colored annotation bars on the heatmap. |
Value
A data frame of bin counts from the multiBamSummary output, and a data frame with annotations.
Author(s)
Amy L. Olex alolex@vcu.edu
Examples
data <- deep.heatmap(deep_file="counts.tab", annot_file="annots.txt", image_name="Plot Title")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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