deep.heatmap | R Documentation |
This function dreated a heatmap from the DeepTools multiBamSummary method, and adds color coded annotation bars to the heatmap to annotation samples. The file is formatted with the following fields: #'chr' 'start' 'end' 'sample1_name.bam' 'sample2_name.bam' ... 'sampleN_name.bam'
deep.heatmap(deep_file, annot_file, outfile_name = "image.jpg",
plot_title = "")
deep_file |
The path and name of the file containing the DeepTools tab delimited results from the multiBamSummary method. |
annot_file |
The path and file name of the tab delimited text file containing the sample annotations to use for adding colored annotation bars on the heatmap. |
A data frame of bin counts from the multiBamSummary output, and a data frame with annotations.
Amy L. Olex alolex@vcu.edu
data <- deep.heatmap(deep_file="counts.tab", annot_file="annots.txt", image_name="Plot Title")
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