In this object, AF16 genotypes are encoded as 1 and HK104 genotypes are encoded as 2. This cross object contains no heterozyous loci. When the extract genotype function is run on this cross object, AF16 genotypes are converted to -1 and HK104 genotypes to 1. For mappings with this cross object, negative effect sizes indicate that Af16 had the greater phenotype value while postive effect sizes indicate that HK104 had a greater phenotype value.
A cross object made with the qtl
package, with genotype and
phenotype subobjects.
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