Description Usage Arguments Value
Find RIAILs for generating NILs to isolate a genomic region
1 | FindRIAILsforNILs(CI.L, CI.R, chromosome)
|
CI.L |
The left marker of the interval, e.g. "UCE1-526" |
CI.R |
The right marker of the interval, e.g. "CE1-108" |
chromosome |
The chromosome of the interval as a quoted roman numeral |
Outputs a list of four elements. CompleteInterval1 - dataframe of strains with a continous genotype block across user input interval strains also have a breakpoint in the surrounding region used to generate plot "complete". BreakInterval - dataframe of strains with breaks in the interval and outside the interval used to generate plot "complete". Breaks - ggplot object of all RIAILs identified to have break points in and around the interval Complete - ggplot object of all RIAILs identified to have a continous genotype stretch across the interval
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