tx_get_transcriptSeqs: Get transcriptome sequences
In AngelCampos/tx_tools: An R package facilitating analysis of RNA modifications, structures, and interactions
tx_get_transcriptSeqs R Documentation
Get transcriptome sequences
Description
Get transcriptome sequences
Usage
tx_get_transcriptSeqs(genome, geneAnnot, outFile = NULL, nCores = 1)
Arguments
genome
list. The full reference genome sequences, as loaded by
tx_load_genome() or prepackaged by BSgenome, see ?BSgenome::available.genomes
geneAnnot
GRanges. Gene annotation as loaded by tx_load_bed().
outFile
character. If specified, sequences will be written to this file name.
Otherwise a character vector will be output
nCores
integer. Number of cores to run the function with. Multi-core
capability not available in Windows OS.
Value
character
AngelCampos/tx_tools documentation built on April 8, 2024, 9:46 p.m.
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| tx_get_transcriptSeqs | R Documentation |
Get transcriptome sequences
Description
Get transcriptome sequences
Usage
tx_get_transcriptSeqs(genome, geneAnnot, outFile = NULL, nCores = 1)
Arguments
genome |
list. The full reference genome sequences, as loaded by
|
geneAnnot |
GRanges. Gene annotation as loaded by |
outFile |
character. If specified, sequences will be written to this file name. Otherwise a character vector will be output |
nCores |
integer. Number of cores to run the function with. Multi-core capability not available in Windows OS. |
Value
character
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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