tx_plot_metaGeneByBins: Plot metagene by bins

In AngelCampos/tx_tools: An R package facilitating analysis of RNA modifications, structures, and interactions

Plot metagene by bins

Description

Plot metagene by bins

Usage

tx_plot_metaGeneByBins(
  txDT,
  colName,
  nBins = 100,
  FUN = "mean",
  minTxLength = 300,
  smooth = TRUE,
  na.rm = TRUE
)

Arguments

txDT	data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
colName	character. Name of the column of numeric (or logical) class to be plot
nBins	integer. Number of bins to divide each gene on
FUN	character. Function to be used to summarize values across bins and genes.
minTxLength	integer. Minimum transcript length to be included in analysis.
smooth	logical. Set to FALSE for not smoothing line.
na.rm	logical. Remove NA values from computations, by default is TRUE.

Value

ggplot

AngelCampos/tx_tools documentation built on April 8, 2024, 9:46 p.m.