reads_demo_01: Forward reads and reverse reads in 'GRanges' format (for demo...
In ArnaudDroitLab/RJMCMCNucleosomes: Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)
Description
Usage
Format
Value
See Also
Examples
Description
A group of forward and reverse reads, in a GRanges, that can be
used to test the rjmcmc function.
Usage
1
Format
A GRanges containing forward and reverse reads.
Value
A GRanges containing forward and reverse reads.
See Also
-
rjmcmc for profiling of nucleosome positions
Examples
1
2
3
4
5
6
## Loading dataset
data(reads_demo_01)
## Nucleosome positioning
rjmcmc(reads = reads_demo_01, nbrIterations = 100, lambda = 3, kMax = 30,
minInterval = 146, maxInterval = 292, minReads = 5)
ArnaudDroitLab/RJMCMCNucleosomes documentation built on May 5, 2019, 7:06 a.m.
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Description Usage Format Value See Also Examples
Description
A group of forward and reverse reads, in a GRanges, that can be
used to test the rjmcmc function.
Usage
1 |
Format
A GRanges containing forward and reverse reads.
Value
A GRanges containing forward and reverse reads.
See Also
-
rjmcmcfor profiling of nucleosome positions
Examples
1 2 3 4 5 6 | ## Loading dataset
data(reads_demo_01)
## Nucleosome positioning
rjmcmc(reads = reads_demo_01, nbrIterations = 100, lambda = 3, kMax = 30,
minInterval = 146, maxInterval = 292, minReads = 5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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