ArnaudDroitLab/nucleoSim: Generate synthetic nucleosome maps

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The synthetic hybridization data of “Tiling Arrays” can also be generated. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform. In addition, a visualization tool is provided to explore the synthetic nucleosome maps.

Getting started

Package details

Bioconductor views Alignment Genetics Sequencing Software StatisticalMethod
Maintainer
LicenseArtistic-2.0
Version1.23.1
URL https://github.com/arnauddroitlab/nucleoSim
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ArnaudDroitLab/nucleoSim")
ArnaudDroitLab/nucleoSim documentation built on March 17, 2022, 11 p.m.