Man pages for AurMad/STOCfree
STOC free model: prediction of probability of freedom from longitudinal data

add_risk_factorAdds a risk factor to a new infection dataset
compile_JAGSCompilation of the JAGS model
date_from_lagGenerates an initial date from a reference date and a time...
extract_herd_from_status_idExtract data from a STOCfree_data object based on status ids
herdBTMBulk tank milk ELISA test results for 100 herds
invlogitInverse logit function
logitlogit function
logit_nwinfLogistic regression for the probability of new infection
logit_nwinf_laggedModelling of all possible lagged relationships between risk...
make_animal_testAggregate animal level data at the herd-month level
make_month_idCreates a data.frame with first date of month and...
make_nwinf_dataCreates a dataset with new infection events from herd level...
plot_priors_inf_dynPlots the prior distributions for the parameters related to...
plot_priors_rfPlotting prior distributions for the risk factors of new...
plot_priors_testsPlot the distribution for the prior distributions on test...
sample_modelDraws samples from the posterior distributions of model...
set_priors_inf_dynSets the parameters asssociated with priors related to...
set_priors_rfSet priors associated with risk factors of new infection
set_priors_testsSet parameters for the Beta distributions used to represent...
sf_add_risk_factorAdd a risk factor to STOCfree_data
sf_remove_risk_factorRemove risk factor from STOCfree_data
show_inf_dynShows the parameters asssociated with priors related to...
show_rfList of risk factors of new infection in a STOCfree_data
show_testsShows parameter of the Beta distributions used to represent...
STOCfree_dataSTOCfree_data class
write_JAGS_modelWrites a text file with the JAGS model. For internal use.
AurMad/STOCfree documentation built on Feb. 18, 2020, 9:28 p.m.