canopy.sample.parallel.mod: Run Canopy in parallel

In AxelitoMartin/TumorEvolution:

Description

Run Canopy in parallel

Usage

canopy.sample.parallel.mod(
  R,
  X,
  WM,
  Wm,
  epsilonM,
  epsilonm,
  C = NULL,
  Y,
  K,
  numchain,
  max.simrun,
  min.simrun,
  writeskip,
  projectname,
  cell.line = NULL,
  plot.likelihood = NULL,
  nCores = 1
)

Arguments

Y	An output object from the make_Y_mat() function.
K	Vector of the number of clones to be used.
numchain	Number of chains for the MCMC. Default is 15.
max.simrun	Maximum number of simulations to perform before convergence. Default is 100000.
min.simrun	Minimum number of simulations to perform before convergence. Default is 10000.
projectname	Name of the project to save results.
sna_obj	An output object from the make_sna_mat() function.
cna_obj	An output object from the make_cna_mat() function.
burnin	Burn-in period for the MCMC. Default is 10.
thin	Thining parameter for the MCMC. Default is 5.
parallel	Should this be run in parallel. Default is FALSE.

Value

Y

AxelitoMartin/TumorEvolution documentation built on Jan. 12, 2021, 2:43 a.m.