get_results_canopy: get_results

Description Usage Arguments Value

View source: R/get-results.R

Description

Get the results from a canopy optimized run

Usage

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get_results_canopy(
  cna.obj,
  tree,
  projectname,
  path = ".",
  path_mut = ".",
  mut.files,
  sample.names = NULL,
  cex_cna = 5,
  epsilon = 0,
  cex_names = 1,
  tree_ccf = FALSE
)

Arguments

projectname

Name of the project to save results.

path

Relative path to where results should be saved. Default is current directory.

path_mut

Relative path to the mutation files used to run canopy

mut.files

Mutation file names (same order as in the canopy run)

sample.names

Sample names for the files

cex_cna

size of font in CNA heatmap

epsilon

Segment aggregation

cex_names

name sizes

tree_ccf

should the tree CCF

Value

Results pdf


AxelitoMartin/TumorEvolution documentation built on Jan. 12, 2021, 2:43 a.m.