inst/unitTests/test_other.R

In BBCG/ramr: Detection of Rare Aberrantly Methylated Regions in Array and NGS Data

test_other <- function () {

  # covers helper and other internal functions

  data(ramr)

  .data <- ramr:::.preprocessData(
    data.ranges=ramr.data, data.samples=ramr.samples,
    data.coverage=as.data.frame(sapply(ramr.samples, function (s) integer(0))),
    transform="identity", exclude.range=c(2,0), ncores=1, verbose=TRUE
  )

  ramr:::rcpp_extract_out(.data)
  t(ramr:::rcpp_extract_coef(.data))
}