data.getMSEA_Metabolon: Metabolite set enrichment analysis (MSEA) (using a...
In BRL-BCM/MolEndoMatch: Molecular Phenotype Patient Matchmaking

A function that returns the pathway enrichment score for all perturbed metabolites in a patient's full metabolomic profile.

1 2	data.getMSEA_Metabolon(met.profile, threshold = 3, type = "zscore", gene.profile = NULL)

`met.profile`	- A character vector of a patient's metabolomic profile, including KEGG IDs and the associated z-score or p-value describing the level of the metabolite compared to controls.
`threshold`	- A cutoff to select metabolites with a zscore > threshold or < -1*threshold.
`type`	- Either "p-value" or "z-score".
`gene.profile`	- Default set to NULL, meaning the default enrichment analysis only considers metabolites. However, if you have gene data, too, set this parameter to a character vector of the gene names with found variants in the patient's record. Gene IDs must be converted to Entrez Identifiers.