plot.pathwayMap: Generate pathway map with patient perturbation data...

Description Usage Arguments Examples

Description

Generate pathway map with patient perturbation data superimposed.

Usage

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## S3 method for class 'pathwayMap'
plot(Pathway.Name, PatientID, patient.zscore,
  scalingFactor, outputFilePath)

Arguments

Pathway.Name

- The name of the pathway map you want to plot patient data on.

PatientID

- An identifier string associated with the patient.

patient.zscore

- A named vector of metabolites with corresponding z-scores.

scalingFactor

- Integer associated with increase in node size.

outputFilePath

- The directory in which you want to store image files.

Examples

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plot.pathwayMap(simMat, path)

BRL-BCM/MolEndoMatch documentation built on May 28, 2019, 11:36 a.m.