Description Usage Arguments Examples
Retrieve the Color Coded Pathway Map based on Patient Metabolomic Profile
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enriched.pathwayID |
- The pathwayID of the pathway you want the image of. |
met.profile |
- A character vector of a patient's metabolomic profile, including KEGG IDs and the associated z-score or p-value describing the level of the metabolite compared to controls. |
type |
- Either "p-value" or "z-score". |
gene.profile |
- Default set to NULL, meaning the default enrichment analysis only considers metabolites. However, if you have gene sets of interest, too, set this parameter to a character vector of the gene names. Gene IDs must be converted to Entrez Identifiers. |
1 | pathway.data = plot.getPathviewImage(met.profile)
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