dataList2List: Convert MultiAssayExperiment object to list and data.frame

In BaderLab/netDx: Network-based patient classifier

Description

Convert MultiAssayExperiment object to list and data.frame

Usage

dataList2List(dat, groupList)

Arguments

dat	(MultiAssayExperiment) Patient data and metadata
groupList	(list) variable groupings used for feature construction. See groupList arg in buildPredictor().

Details

Used by internal routines in netDx

Value

(list) Keys are: 1) assays: list of matrices, each corresponding to data from a particular layer 2) pheno: (data.frame) sample metadata

Examples

data(xpr,pheno)
require(MultiAssayExperiment)
objlist <- list("RNA"=SummarizedExperiment(xpr))
mae <- MultiAssayExperiment(objlist,pheno)
groupList <- list(RNA=rownames(xpr))
dl <- dataList2List(mae,groupList)
summary(dl) 

BaderLab/netDx documentation built on Sept. 26, 2021, 9:13 a.m.