API for BaderLab/netDx
Network-based patient classifier

Global functions
.get_cache	Man page Source code
.onLoad	Source code
MB.pheno	Man page
RR_featureTally	Man page Source code
avgNormDiff	Man page Source code
buildPredictor	Man page Source code
buildPredictor_sparseGenetic	Man page Source code
callFeatSel	Man page Source code
callOverallSelectedFeatures	Man page Source code
cleanPathwayName	Man page Source code
cnv_GR	Man page
cnv_TTstatus	Man page
cnv_netPass	Man page
cnv_netScores	Man page
cnv_patientNetCount	Man page
cnv_pheno	Man page
compareShortestPath	Man page Source code
compileFeatureScores	Man page Source code
compileFeatures	Man page Source code
confmat	Man page
confusionMatrix	Man page Source code
convertProfileToNetworks	Man page Source code
countIntType	Man page Source code
countIntType_batch	Man page Source code
countPatientsInNet	Man page Source code
createPSN_MultiData	Man page Source code
dataList2List	Man page Source code
enrichLabelNets	Man page Source code
featScores	Man page
fetchPathwayDefinitions	Man page Source code
genes	Man page
getCorrType	Man page Source code
getEMapInput	Man page Source code
getEMapInput_many	Man page Source code
getEnr	Man page Source code
getFeatureScores	Man page Source code
getFileSep	Man page Source code
getGMjar_path	Man page Source code
getNetConsensus	Man page Source code
getOR	Man page Source code
getPSN	Man page Source code
getPatientPredictions	Man page Source code
getPatientRankings	Man page Source code
getPerformance	Man page Source code
getRegionOL	Man page Source code
getResults	Man page Source code
getSimilarity	Man page Source code
makeInputForEnrichmentMap	Man page Source code
makePSN_NamedMatrix	Man page Source code
makePSN_RangeSets	Man page Source code
makeQueries	Man page Source code
makeSymmetric	Man page Source code
mapNamedRangesToSets	Man page Source code
matrix_getIJ	Man page Source code
modelres	Man page
moveInteractionNets	Man page Source code
normDiff	Man page Source code
npheno	Man page
pathwayList	Man page
pathway_GR	Man page
perfCalc	Man page Source code
pheno	Man page
pheno_full	Man page
plotEmap	Man page Source code
plotIntegratedPatientNetwork	Man page Source code
plotPerf	Man page Source code
plotPerf_multi	Man page Source code
predRes	Man page
predict	Man page Source code
predictPatientLabels	Man page Source code
pruneNet	Man page Source code
pruneNet_pctX	Man page Source code
pruneNets	Man page Source code
randAlphanumString	Man page Source code
readPathways	Man page Source code
replacePattern	Man page Source code
runFeatureSelection	Man page Source code
runQuery	Man page Source code
setupFeatureDB	Man page Source code
silh	Man page
sim.eucscale	Man page Source code
sim.pearscale	Man page Source code
simpleCap	Man page Source code
smoothMutations_LabelProp	Man page Source code
sparsify2	Man page Source code
sparsify3	Man page Source code
splitTestTrain	Man page Source code
splitTestTrain_resampling	Man page Source code
tSNEPlotter	Man page Source code
thresholdSmoothedMutations	Man page Source code
toymodel	Man page
updateNets	Man page Source code
writeNetsSIF	Man page Source code
writeQueryBatchFile	Man page Source code
writeQueryFile	Man page Source code
writeWeightedNets	Man page Source code
xpr	Man page