writeQueryFile: Wrapper to write GeneMANIA query file

In BaderLab/netDx: Network-based patient classifier

Description

Wrapper to write GeneMANIA query file

Usage

writeQueryFile(
  qSamps,
  incNets = "all",
  numReturn = 1L,
  outFile,
  orgName = "predictor"
)

Arguments

qSamps	(char) vector of patient IDs in query
incNets	(char) vector of networks to include in this analysis (features/pathway names). Useful for subset-based feature selection
numReturn	(integer) number of patients to return in ranking file
outFile	(char) path to output file
orgName	(char) organism name

Value

No value. Side effect of writing the query file to outFile

Examples

data(pheno)
writeQueryFile(pheno$ID[seq_len(5)], 'all',nrow(pheno), 'myquery.txt')

BaderLab/netDx documentation built on Sept. 26, 2021, 9:13 a.m.