writeQueryBatchFile: Write batch.txt file required to create GeneMANIA database
In BaderLab/netDx: Network-based patient classifier

Description Usage Arguments Details Value Examples

Write batch.txt file required to create GeneMANIA database

writeQueryBatchFile(
  netDir,
  netList,
  outDir = tempdir(),
  idFile,
  orgName = "predictor",
  orgDesc = "my_predictor",
  orgAlias = "my_predictor",
  taxID = 1339
)

`netDir`	(char) path to dir with networks
`netList`	(char) vector of network names
`outDir`	(char) directory to write batch file
`idFile`	(char) path to file with patient IDs
`orgName`	(char) organism name. Don't change the default unless you know what you are doing.
`orgDesc`	(char) organism description. Similar to `orgName`, don't change the default
`orgAlias`	(char) organism alias. Similar to `orgName`, don't change the default.
`taxID`	(integer) taxonomyID required for GeneMANIA . Similar to `orgName`, don't change the default.

This file is used to compile features into a single database for feature selection.

No value. Side effect of writing batch file to <outDir>/batch.txt.

data(npheno)
netDir <- system.file("extdata","example_nets",package="netDx")
netList <- dir(netDir,pattern='txt$')
writeQueryBatchFile(netDir,netList, tempdir(), npheno$ID)