annotate_peaks: Annotate Peaks
In Bankso/ZentTools_too: What the Package Does (One Line, Title Case)
Description
Annotate Peaks
Usage
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annotate_peaks(
zent_obj,
outdir = getwd(),
genome_annotation,
promoter_downstream = 1000,
promoter_upstream = 1000,
feature_type = "gene"
)
Arguments
zent_obj
ZentTools object.
outdir
Directory to output the annotated peaks.
genome_annotation
Genome GTF annotation file.
promoter_downstream
Bases downstream of TSS to define promoter.
promoter_upstream
Bases upstream of TSS to define promoter.
feature_type
Either 'gene' or 'transcript'.
Bankso/ZentTools_too documentation built on Jan. 18, 2021, 5:36 p.m.
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Description
Annotate Peaks
Usage
1 2 3 4 5 6 7 8 | annotate_peaks(
zent_obj,
outdir = getwd(),
genome_annotation,
promoter_downstream = 1000,
promoter_upstream = 1000,
feature_type = "gene"
)
|
Arguments
zent_obj |
ZentTools object. |
outdir |
Directory to output the annotated peaks. |
genome_annotation |
Genome GTF annotation file. |
promoter_downstream |
Bases downstream of TSS to define promoter. |
promoter_upstream |
Bases upstream of TSS to define promoter. |
feature_type |
Either 'gene' or 'transcript'. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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