bowtie2_index: Bowtie2 Index Generation
In Bankso/ZentTools_too: What the Package Does (One Line, Title Case)
View source: R/bowtie_alignment.R
Description
Bowtie2 Index Generation
Usage
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bowtie2_index(
zent_obj,
genome_assembly,
outdir = getwd(),
index_name = "bowtie2_index"
)
Arguments
zent_obj
Zent object.
genome_assembly
Path to genome fasta file.
outdir
Output directory for STAR genome index.
index_name
The naming structure given to the index.
Bankso/ZentTools_too documentation built on Jan. 18, 2021, 5:36 p.m.
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View source: R/bowtie_alignment.R
Description
Bowtie2 Index Generation
Usage
1 2 3 4 5 6 | bowtie2_index(
zent_obj,
genome_assembly,
outdir = getwd(),
index_name = "bowtie2_index"
)
|
Arguments
zent_obj |
Zent object. |
genome_assembly |
Path to genome fasta file. |
outdir |
Output directory for STAR genome index. |
index_name |
The naming structure given to the index. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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