make_bigwigs: Generate Bigwigs
In Bankso/ZentTools_too: What the Package Does (One Line, Title Case)

Generate Bigwigs

make_bigwigs(
  zent_obj,
  outdir = getwd(),
  bin_size = 10,
  normalize_using = NA,
  genome_size = NA,
  skip_non_covered = TRUE,
  min_fragment = NA,
  max_fragment = NA,
  extend_reads = 200,
  scale_factors = NA,
  split_strands = FALSE,
  library_type = NA,
  temp_dir = "./temp"
)

`zent_obj`	ZentTools object.
`outdir`	Output directory.
`bin_size`	Bin size for coverage summary.
`normalize_using`	Either 'CPM' or 'RPGC'.
`genome_size`	Effective genome size.
`skip_non_covered`	Should regions without coverage be skipped.
`min_fragment`	Minimum fragment length.
`max_fragment`	Maximum fragment length.
`extend_reads`	Distance to extend single-end reads. Set to NA to not extend reads.
`scale_factors`	Takes a named vector, with the name being the sample name, and the value being the scale factor. If set will override 'normalzie_using' option.
`split_strands`	For RNA-seq, whether to split the strands into positive and minus strand files.
`library_type`	If split_strands is TRUE, specify library chemistry as either 'dUTP' or 'ligation'.
`temp_dir`	Temporary directory to write files to.