predict_gmean_byelt: Geometric mean (gmean) by elements occurring within the...
In BenitoJaillard/combinAna: Element clustering that best accounts for an assembly property or function
Description
Usage
Arguments
Details
Value
Description
The numeric vector fct get together the properties
of assemblages belonging to different assembly motifs. The properties
fct of assemblages belonging to a given assembly motif and
containing a given element are separately averaged. The property of
each assemblage is computed as the average of mean values of assemblages
containing the same elements as the considered assemblage. The
motif of each vector element is specified in the vector assMotifs.
The elemental composition of each assemblage is specified in the
binary matrix mOccur: 0 if the element does not occur,
1 if the element occurs.
Usage
1
predict_gmean_byelt(fct, assMotifs, mOccur)
Arguments
fct
a vector of numeric values (assembly properties).
assMotifs
a vector of labels of length(fct) (assembly motifs).
mOccur
a matrix of occurrence (occurrence of elements).
Its first dimension equals to length(fct). Its second dimension
equals to the number of elements.
Details
Prediction is computed using geometric mean gmean by
element byelt occurring within the assemblage and other
assemblages of a same motif, by including all assemblages belonging
to a same motif, even the one to predict.
Value
Return a vector of length(fct), of which values are
computed as the geometric mean of all vector elements belonging to
a same motif.
BenitoJaillard/combinAna documentation built on May 9, 2019, 2:17 a.m.
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Description Usage Arguments Details Value
Description
The numeric vector fct get together the properties
of assemblages belonging to different assembly motifs. The properties
fct of assemblages belonging to a given assembly motif and
containing a given element are separately averaged. The property of
each assemblage is computed as the average of mean values of assemblages
containing the same elements as the considered assemblage. The
motif of each vector element is specified in the vector assMotifs.
The elemental composition of each assemblage is specified in the
binary matrix mOccur: 0 if the element does not occur,
1 if the element occurs.
Usage
1 | predict_gmean_byelt(fct, assMotifs, mOccur)
|
Arguments
fct |
a vector of numeric values (assembly properties). |
assMotifs |
a vector of labels of |
mOccur |
a matrix of occurrence (occurrence of elements).
Its first dimension equals to |
Details
Prediction is computed using geometric mean gmean by
element byelt occurring within the assemblage and other
assemblages of a same motif, by including all assemblages belonging
to a same motif, even the one to predict.
Value
Return a vector of length(fct), of which values are
computed as the geometric mean of all vector elements belonging to
a same motif.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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