predict_gmean_bymot: Geometric mean (gmean) by motif (bymot)

In BenitoJaillard/combinAna: Element clustering that best accounts for an assembly property or function

Description

Take the numeric vector fct and return a vector of same length, of which values are computed as the geometric mean of all vector elements belonging to a same motif. The motif of each vector element is specified in the vector assMotifs.

Usage

predict_gmean_bymot(fct, assMotifs)

Arguments

fct	a vector of numeric values (assembly properties).
assMotifs	a vector of labels of length(fct) (assembly motifs).

Details

Prediction is computed using geometric mean gmean by motif bymot in a whole (WITHOUT taking into account species contribution) by including all elements belonging to a same motif, even the one to predict.

Value

Return a vector of length(fct), of which values are computed as the geometric mean of all vector elements belonging to a same motif.

BenitoJaillard/combinAna documentation built on May 9, 2019, 2:17 a.m.