predict_gmean_bymot_LOO_xpr: Geometric mean (gmean) by motif (bymot) by leave-one-out...

In BenitoJaillard/combinAna: Element clustering that best accounts for an assembly property or function

Description

Take a numeric vector and return the predicted vector computed as the gGeometric mean of all elements belonging to a same motif.

Usage

predict_gmean_bymot_LOO_xpr(fct, assMotifs, xpr)

Arguments

fct	a vector of numeric values (assembly properties).
assMotifs	a vector of labels of same length as fct (assembly motifs).
xpr	a vector of labels of same length as fct (assembly experiments).

Details

Prediction computed using geometric mean gmean by motif bymot in a whole (WITHOUT taking into account species contribution) by excluding the element to predict.

Value

Return a vector of same length as fct, of which values are computed as the geometric mean of all vector elements, over several experiments, excepted the value of element to predict that have been left out.

BenitoJaillard/combinAna documentation built on May 9, 2019, 2:17 a.m.