predict_gmean_bymot_xpr: Geometric mean (gmean) by motif (bymot) over several...

In BenitoJaillard/combinAna: Element clustering that best accounts for an assembly property or function

Description

Take the numeric vector fct and return a vector of same length, of which values are computed as the geometric mean of all vector elements belonging to a same motif, over several experiments. The motif of each vector element is specified in the vector assMotifs. The experiment of each vector element is specified in the vector xpr.

Usage

predict_gmean_bymot_xpr(fct, assMotifs, xpr)

Arguments

fct	a vector of numeric values (assembly properties).
assMotifs	a vector of labels of same length as fct (assembly motifs).
xpr	a vector of labels of same length as fct (assembly experiments).

Details

Prediction is computed using geometric mean gmean by motif bymot in a whole (WITHOUT taking into account species contribution) by including all elements belonging to a same motif, even the one to predict.

Value

Return a vector of same length as fct, of which values are computed as the geometric mean of all vector elements belonging to the same motif over several experiments.

BenitoJaillard/combinAna documentation built on May 9, 2019, 2:17 a.m.