Plot_trace: Plot the trace plots of the accepted samples.

In BenjamenSimon/EpidemicR: Stochastic modelling and inference for epidemics.

Description

This function takes the results from an inference function, and plots the trace plot of all the accepted samples, with a red line to represent the true value if it falls within the limits. If a parameter was fixed it will plot a straight line.

Usage

Plot_trace(res, params, burnin = NA)

Arguments

res	The results matrix from the MCMC functions.
params	A named vector of the parameters, with names "beta1", "beta2", "gamma", "d", "p", and "llh".
burnin	The ammount of burnin that wants to be removed (defaults to NA to plot the full trace plots).

Value

A description of the average acceptance probabilities.

Examples

Plot_trace(res, params, burnin = NA)

BenjamenSimon/EpidemicR documentation built on March 23, 2020, 11:03 p.m.