chris_integral_part: Calculate the integral part of the infection likelihood...

In BenjamenSimon/EpidemicR: Stochastic modelling and inference for epidemics.

Description

This function is used in the calculation of the likelihood for a General Stochastic Epidemic, and calculates the integral part of the infection likelihood, using the alternative double-sum parameterisation.

Usage

chris_integral_part(t_inf_j, events, B)

Arguments

t_inf_j	A vector of the infection times of all individuals (Inf if not infected), ordered by ID.
events	A 2 column matrix where the first column is the infection times, and the second is the paired removal times.
B	The infection rate matrix.

Value

Returns the value of the integral detailed above.

Examples

This function is utilised by the simple_log_likelihood function.

BenjamenSimon/EpidemicR documentation built on March 23, 2020, 11:03 p.m.