simple_integral_part: Calculate the integral part of the infection likelihood...

In BenjamenSimon/EpidemicR: Stochastic modelling and inference for epidemics.

Description

This function is used in the calculation of the likelihood for a General Stochastic Epidemic, and calculates the integral part of the infection likelihood, using the alternative double-sum parameterisation.

Usage

simple_integral_part(I = inf.times, R = rem.times,
  beta.mat = beta.mat)

Arguments

I	A vector of the infection times of all individuals (Inf if not infected), ordered by ID.
R	A vector of the infection times of all individuals (Inf if not infected), ordered by ID.
beta.mat	The infection rate matrix.

Value

Returns the value of the integral detailed above.

Examples

This function is utilised by the simple_log_likelihood function.

BenjamenSimon/EpidemicR documentation built on March 23, 2020, 11:03 p.m.