chao1: chao1

In Benjamin-Vincent-Lab/binfotron: Binfotron Bioinformatics Analysis Tools Suite

chao1

Description

chao1

Usage

chao1(my_counts, should_screen_counts = TRUE)

Arguments

my_counts	vector of postive integers
should_screen_counts	Boolean to indicate if the coutns should be screened for valid data. Set to false if the data has already been checked by another function.

Value

Returns vegan::estimateR(round(my_counts))["S.chao1"] of the non-zero counts with NA removed.

See Also

Other diversity: dXX_index(), evenness(), get_corrected_entropy_rdata_2_4096_path(), get_corrected_entropy_rdata_4097_65536_path(), get_corrected_entropy_rdata_ab1025_65K_ent1_8_path(), get_corrected_entropy_rdata_ab8_1024_ent1_8_path(), has_sufficient_abundance_for_entropy(), inv_simpson(), predict_true_entropy_from_counts(), predict_true_entropy_from_diversity(), screen_counts(), shannon_entropy()

Benjamin-Vincent-Lab/binfotron documentation built on April 11, 2025, 10:05 p.m.