normalize_rows_by_quartile: Normalize data values across rows by quartile

In Benjamin-Vincent-Lab/binfotron: Binfotron Bioinformatics Analysis Tools Suite

Normalize data values across rows by quartile

Description

Normalizes across rows to a certain quartile. Basically wraps quantile

Usage

normalize_rows_by_quartile(
  my_dt = NULL,
  col_names = NULL,
  my_summary = "Upper-quartile normalizing data across rows.",
  norm_factor = 1000,
  percentile = 75,
  sample_key = get_default_sample_key(),
  readme_path = NULL
)

Arguments

my_dt	data.table input
col_names	Vector of character strings to name the columns that will have this operation performed on them. Uses operatable_columns
my_summary	Character string to change the default comment that will be appended to my_dt.
norm_factor	Number indicating the value to which the quartile is normalized
percentile	Percentile to which the data will be normalized
sample_key	Character string to specify the column that is the sample key. This column will not be operated upon.
readme_path	Optional path to which the comments will be appended.

Details

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ normalize_rows_by_quartile ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Benjamin-Vincent-Lab/binfotron documentation built on Oct. 1, 2024, 8:33 p.m.