getAnnotation: Retrieve Bgee experiments annotation for targeted species and...

View source: R/getAnnotation.R

getAnnotationR Documentation

Retrieve Bgee experiments annotation for targeted species and data type.

Description

This function loads the annotation of experiments and samples of quantitative expression datasets (rna_seq, affymetrix, sc_full_length) that are available from Bgee.

Usage

getAnnotation(myBgeeObject)

Arguments

myBgeeObject

A Reference Class Bgee object, notably specifying the targeted species and data type.

Value

A list of two elements, including a data frame of the annotation of experiments for chosen species (field "experiment.annotation") and a data frame of the annotation of chips/libraries from these experiments (field "sample.annotation").

Author(s)

Andrea Komljenovic and Julien Roux.

Examples

{
  bgee <- Bgee$new(species = "Mus_musculus", dataType = "rna_seq")
  myAnnotation <- getAnnotation(bgee)
}


BgeeDB/BgeeDB_R documentation built on Aug. 16, 2024, 9:42 p.m.