blastn includes... Iteration_iter_num Iteration_query_id Iteration_query_def Iteration_query_len Hit_num Hit_id Hit_def Hit_accession Hit_len Hsp_num Hsp_bit_score Hsp_score Hsp_evalue Hsp_query_from Hsp_query_to Hsp_hit_from Hsp_hit_to Hsp_query_frame Hsp_identity Hsp_positive Hsp_gaps Hsp_align_len Hsp_qseq Hsp_hseq Hsp_midline
character by default the fields are for 'blastn' but this is set automatically when the file is opened. Alternatively, this can be the xml filename.
character of NULL if not NULL fields are subset to include
just these. The default can be found using
a named list of fields to return
app the name of the blast application by default 'blastn'
blastn a list of character vectors fields in for Iteration, Hit and Hsp
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