blastxml_dump: Extract blast XML contents possibly writing to a text file

In BigelowLab/blastxml: Extract data from Blast XML files

Description

Extract blast XML contents possibly writing to a text file

Usage

blastxml_dump(xml_file = get_example_filename(), out_file = NULL,
  sep = "\t", bxd = NULL, fields = NULL, form = c("matrix",
  "tibble")[1], ...)

Arguments

xml_file	character - the path and name of the XML file
out_file	character the path and name to output file, or NULL to skip saving the file
sep	charcater field separator if writing to file
bxd	list of known fields for the blast type, see link{BXD}
fields	character vector of fields to extract, defaults to all in bxd
form	character, either matrix or tibble
...	further arguments for write.table

Value

character matrix or tibble invisibly

BigelowLab/blastxml documentation built on May 5, 2019, 2:42 p.m.