plot_tetramers: Plot the Tetramers results with our without blast annonations

In BigelowLab/tetramers: Tetramer Analysis with Principle Component Analysis

Plot the Tetramers results with our without blast annonations

Description

Plot the Tetramers results with our without blast annonations

Usage

plot_tetramers(X, filename = file.path(X$out_dir, paste0(paste(X$name,
  X$parameters[["WINDOW"]], X$parameters[["STEP"]], "PC", sep = "-"), ".pdf")),
  dim = c(width = 8, height = 8), MAXSTRING = 35,
  addBlast = !is.null(X$blast_data), ...)

Arguments

X	a Tetramers class object
filename	character, the name of the output file
dim	a 2 element vector of output width and height in inches
MAXSTRING	numeric, the maximum displayed length of a contig name
addBlast	logical for suppressing blast annotations
...	further arguments for the pdf device

Value

named logical indicating that the ouptut file exists

BigelowLab/tetramers documentation built on April 3, 2022, 8:22 p.m.