API for BimberLab/cellhashR
A Package for Demultiplexing Cell Hashing Data
| Global functions | |
|---|---|
| .AssignCallsToMatrix | Source code |
| .CreateClusterTilePlot | Source code |
| .EnsureNonSparse | Source code |
| .GetAllCombinations | Source code |
| .InferPerplexity | Source code |
| .InferPerplexityFromSeuratObj | Source code |
| .LoadCountMatrix | Source code |
| .LogMetric | Source code |
| .LogProgress | Source code |
| .PlotClusters | Source code |
| .PlotViolin | Source code |
| .ProcessEnsemblHtoCalls | Source code |
| .RestoreUnderscoreToHtoNames | Source code |
| AppendCellHashing | Man page Source code |
| BFFDemux | Source code |
| CalculateSaturationFor10x | Man page Source code |
| CallAndGenerateReport | Man page Source code |
| ClassifyCells | Source code |
| DoCellFiltering | Source code |
| DoHtoDemux | Source code |
| DoRowFiltering | Source code |
| EstimateMultipletRate | Man page Source code |
| FindThresh | Source code |
| GenerateByRowSummary | Source code |
| GenerateCellHashCallsBFF | Source code |
| GenerateCellHashCallsDemuxEM | Source code |
| GenerateCellHashCallsDemuxmix | Source code |
| GenerateCellHashCallsDropletUtils | Source code |
| GenerateCellHashCallsGMMDemux | Source code |
| GenerateCellHashCallsMultiSeq | Source code |
| GenerateCellHashCallsSeqND | Source code |
| GenerateCellHashCallsSeurat | Source code |
| GenerateCellHashCallsThreshold | Source code |
| GenerateCellHashingCalls | Man page Source code |
| GetAssayData4Or5 | Source code |
| GetExampleMarkdown | Man page Source code |
| GetPlotColors | Source code |
| GetSeed | Man page Source code |
| GetTotalPlotPages | Source code |
| HTODemux | Source code |
| LocalMaxima | Source code |
| MULTIseqDemux | Source code |
| MaxN | Source code |
| Melt | Source code |
| MinN | Source code |
| NormalizeBimodalQuantile | Source code |
| NormalizeCLR | Source code |
| NormalizeLog2 | Source code |
| NormalizeQuantile | Source code |
| NormalizeRelative | Source code |
| ParameterScan | Man page Source code |
| PerformHashingClustering | Source code |
| PlotLibrarySaturation | Man page Source code |
| PlotLibrarySaturationByMarker | Man page Source code |
| PlotNormalizationQC | Man page Source code |
| PrintColumnQc | Source code |
| PrintRowQc | Source code |
| ProcessCountMatrix | Man page Source code |
| SNR | Source code |
| SeqNDDemux | Source code |
| SetAssayData4Or5 | Source code |
| SetSeed | Man page Source code |
| SimplifyHtoNames | Source code |
| SummarizeCellsByClassification | Man page Source code |
| SummarizeHashingCalls | Source code |
| ThresholdDemux | Source code |
| ThresholdHashedDrops | Source code |
| TopN | Source code |
| TransposeDF | Source code |
| generateBFFGridPlot | Source code |
| getCountCutoff | Source code |
| getNegNormedData | Source code |
| getPosNormedData | Source code |
| get_model | Source code |
| get_right_dist_beta | Source code |
