EstimateMultipletRate: Estimate Multiplet Rate for 10x Genomics Data
In BimberLab/cellhashR: A Package for Demultiplexing Cell Hashing Data
EstimateMultipletRate R Documentation
Estimate Multiplet Rate for 10x Genomics Data
Description
Estimates multiplet rate by using barcode matrix dimensions and formulae from the Saijita Lab's calculator (https://satijalab.org/costpercell/)
Usage
EstimateMultipletRate(numCellsRecovered, num10xRuns = 1, chemistry = "10xV3")
Arguments
numCellsRecovered
The number of cells recovered (number of columns in the count matrix)
num10xRuns
The number of lanes the cells are loaded into (expected to be 1)
chemistry
The version of 10x chemistry reagent kit used
BimberLab/cellhashR documentation built on March 20, 2024, 9:23 a.m.
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| EstimateMultipletRate | R Documentation |
Estimate Multiplet Rate for 10x Genomics Data
Description
Estimates multiplet rate by using barcode matrix dimensions and formulae from the Saijita Lab's calculator (https://satijalab.org/costpercell/)
Usage
EstimateMultipletRate(numCellsRecovered, num10xRuns = 1, chemistry = "10xV3")
Arguments
numCellsRecovered |
The number of cells recovered (number of columns in the count matrix) |
num10xRuns |
The number of lanes the cells are loaded into (expected to be 1) |
chemistry |
The version of 10x chemistry reagent kit used |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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