R/data.R

In BioHPC/LONGO: Long gene expression as a metric for neuronal identity

#' Example Rat dataset
#'
#' Yu et al., Nature Communications 2014
#' Raw data  was downloaded from: http://pgx.fudan.edu.cn/ratbodymap/
#' ratbodymap_data/fordownload/Ratbodymap_Gene_FPKM_v2.txt.gz
#' The replicates for each sample were averaged to get a single sample for
#'  easy testing.
#' @name exampleRatData
#' @format A data frame with 40,2064 rows and 12 columns:
#' \itemize{
#'   \item{Gene_symbol}{1}
#'   \item{Adr}{2}
#'   \item{bRN}{3}
#'   \item{Hrt}{4}
#'   \item{Kdn}{5}
#'   \item{Lng}{6}
#'   \item{Lvr}{7}
#'   \item{Msc}{8}
#'   \item{Spl}{9}
#'   \item{Thm}{10}
#'   \item{Tst}{11}
#'   \item{Utr}{12}
#' }
#'
#' @source \url{http://pgx.fudan.edu.cn/ratbodymap/ratbodymap_data/fordownload/Ratbodymap_Gene_FPKM_v2.txt.gz}
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#' Example Human dataset
#'
#' Hu W, et al., Cell Stem Cell 2015
#' Raw data  was downloaded from: https://ftp.ncbi.nlm.nih.gov/geo/series/
#' GSE69nnn/GSE69480/matrix/GSE69480_series_matrix.txt.gz
#' The replicates for each sample were averaged to get a single sample for
#'  easy testing.
#' @name exampleHumanData
#' @format A data frame with 49,395 rows and 7 columns:
#' \itemize{
#'   \item{ID_REF}{1}
#'   \item{GSM1701831}{2}
#'   \item{GSM1701832}{3}
#'   \item{GSM1701833}{4}
#'   \item{GSM1701834}{5}
#'   \item{GSM1701835}{6}
#'   \item{GSM1701836}{7}
#' }
#'
#' @source \url{https://ftp.ncbi.nlm.nih.gov/geo/series/GSE69nnn/GSE69480/matrix/GSE69480_series_matrix.txt.gz}
NULL