script/Victor_HAF_data_processing.R

In BioHPC/LONGO: Long gene expression as a metric for neuronal identity

# MicroRNA-9/9*-124 + CDM reprogramming in HAF by Michelle Richner
# Data analyzed by Matthew J McCoy
# File name: Victor_HAF_reprogramming.csv

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# LONGO processing information
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# Species: Hsapiens
# Gene ID: external_gene_name
# Quantile normalized
# Data filtered (>1 cpm for at least 4 samples)
# Sliding median
# Multi probe values averaged
# Bin size: 200
# Step size: 40
# Control column: FB1_a