Description Usage Arguments Details Value See Also
Reconstruct the data given the BioSSA decomposition and the desired grouping of the elementary components.
1 2 3 4 | ## S3 method for class 'BioSSA2d'
reconstruct(x, groups, ...)
## S3 method for class 'BioSSA3d'
reconstruct(x, groups, ...)
|
x |
BioSSA decomposition object |
groups |
list of numeric vectors, indices of elementary components used for reconstruction, the entries of the list can be named, see 'Value' for more information |
... |
further arguments passed to corresponding SSA reconstruction method |
For ‘embryo2d’ object, the function run reconstruct
method for stored
‘2d.ssa’ object and then performs back interpolation to nuclei positions.
For ‘embryo3d’ object, the function run reconstruction for all ‘embryo2d’ that are stored within ‘embrio3d’, then perform desweeping and joining reconstructed fragments of whole 3d embryo.
List of reconstructed embryos (‘embrio2d’ or ‘embrio3d’ correspondingly).
Elements of the list have the same
names as elements of groups
. If the group is unnamed, then
corresponding component will obtain name ‘Fn’, where ‘n’ is its index
in groups
list.
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