Description Usage Arguments Details Examples
plot
method for class ‘embryo3d’
1 2 |
x |
object of class ‘embryo3d’ |
type |
plot type |
... |
further arguments passed to plot functions |
For type = 'hull'
, the convex hull of nuclei is depicted,
the color is determined by intensities. At edges the color is obtained by linear interpolation.
For type = 'nuclei'
the nuclei are deposted as color spheres.
Color is determined by intensities.
Warning: Drawing can take a long time if the number of nuclei is large.
Parameter col
is vector of two colors corresponding to minimal and maximal intensivities.
Default value is c('blue', 'red')
.
Other parameters are passed to functions
shade3d
and plot3d
correspondingly.
1 2 3 4 | file <- system.file("extdata/pce", "v5_s12166-23au07-22.pce", package = "BioSSA")
pce <- read.pce.gene(file, gene = "eve")
plot(pce, type = "hull")
plot(pce, type = "nuclei")
|
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