moved_to_pwalign: InDel objects
In Bioconductor/Biostrings: Efficient manipulation of biological strings
moved_to_pwalign R Documentation
InDel objects
Description
Starting with BioC 3.19, the following functions are defined in the
pwalign package:
-
writePairwiseAlignments
-
nucleotideSubstitutionMatrix
-
errorSubstitutionMatrices
-
qualitySubstitutionMatrices
-
insertion
-
deletion
-
unaligned
-
aligned
-
indel
-
nindel
-
PairwiseAlignments
-
alignedPattern
-
alignedSubject
-
PairwiseAlignmentsSingleSubject
-
nedit
-
mismatchTable
-
mismatchSummary
-
compareStrings
-
pid
-
pairwiseAlignment
-
stringDist
Bioconductor/Biostrings documentation built on May 3, 2024, 7:28 a.m.
R Package Documentation
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| moved_to_pwalign | R Documentation |
InDel objects
Description
Starting with BioC 3.19, the following functions are defined in the pwalign package:
-
writePairwiseAlignments -
nucleotideSubstitutionMatrix -
errorSubstitutionMatrices -
qualitySubstitutionMatrices -
insertion -
deletion -
unaligned -
aligned -
indel -
nindel -
PairwiseAlignments -
alignedPattern -
alignedSubject -
PairwiseAlignmentsSingleSubject -
nedit -
mismatchTable -
mismatchSummary -
compareStrings -
pid -
pairwiseAlignment -
stringDist
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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