predefined_scoring_matrices: Predefined scoring matrices

In Bioconductor/Biostrings: Efficient manipulation of biological strings

Predefined scoring matrices

Description

Predefined scoring matrices for nucleotide and amino acid alignments.

WARNING: All the BLOSUM* and PAM* scoring matrices listed below are now located in the pwalign package and will soon be removed from the Biostrings package.

Usage

data(BLOSUM45)
data(BLOSUM50)
data(BLOSUM62)
data(BLOSUM80)
data(BLOSUM100)
data(PAM30)
data(PAM40)
data(PAM70)
data(PAM120)
data(PAM250)

Format

See ?pwalign::predefined_scoring_matrices in the pwalign package.

Details

See ?pwalign::predefined_scoring_matrices in the pwalign package.

Examples

## See ?pwalign::predefined_scoring_matrices in the pwalign package.

Bioconductor/Biostrings documentation built on Dec. 16, 2024, 8:46 a.m.