keggInfo: Displays the current statistics of a given database

In Bioconductor/KEGGREST: Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

Displays the current statistics of a given database

Description

Displays statistics of a given database, such as number of entries, version, release date, and source.

Usage

keggInfo(database)

Arguments

database

Either a KEGG database (list available via listDatabases()), a KEGG organism code (list available by calling keggList()) with the organism argument), or a T number (list available by calling keggList() with the genome argument.)

Value

A character vector containing statistics about database.

Author(s)

Dan Tenenbaum

References

https://www.kegg.jp/kegg/docs/keggapi.html

Examples

res <- keggInfo("kegg") ## displays the current statistics of the KEGG database
cat(res)
res <- keggInfo("pathway") ## displays the number pathway entries including both
                    ## the reference and organism-specific pathways
cat(res)
res <- keggInfo("hsa") ## displays the number of gene entries for the
                    ## KEGG organism Homo sapiens
cat(res)

Bioconductor/KEGGREST documentation built on Oct. 31, 2024, 7:01 a.m.