listDatabases: Lists the KEGG databases which may be searched.

View source: R/KEGGREST.R

listDatabasesR Documentation

Lists the KEGG databases which may be searched.

Description

Lists the KEGG databases which may be searched. In most cases, you can also use a KEGG organism name or T number (genome identifier) as a database name.

Usage

listDatabases()

Value

A character vector of database names.

Author(s)

Dan Tenenbaum

References

https://www.kegg.jp/kegg/docs/keggapi.html

See Also

keggList

Examples

listDatabases()
res <- keggList("organism") ## list all organisms
nrow(res)
head(res)
res <- keggList("hsa") ## list all human genes
length(res)
head(res)
## keggList("T01001") ## list all human genes
res <- keggList("genome") ## list all genome identifiers
length(res)
head(res)

Bioconductor/KEGGREST documentation built on July 14, 2022, 9:40 p.m.