mark.pathway.by.objects | R Documentation |
Given a KEGG pathway id and a set of KEGG gene ids, the functions return the URL of a KEGG pathway diagram with the elements corresponding to the genes marked by red or specified color
mark.pathway.by.objects(pathway.id, object.id.list) color.pathway.by.objects(pathway.id, object.id.list, fg.color.list, bg.color.list)
pathway.id |
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object.id.list |
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fg.color.list |
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bg.color.list |
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This function only returns the URL of the KEGG pathway diagram. Use
the function browseURL
to view the diagram.
These functions are not part of the KEGG REST API; they are provided
because they existed in KEGGSOAP
and an alternative implementation
was possible.
This function returns a character string for the url
Jianhua Zhang
https://www.kegg.jp/kegg/docs/keggapi.html
browseURL
url <- mark.pathway.by.objects( "path:eco00260", c("eco:b0002", "eco:c00263") ) if(interactive()){ browseURL(url) } url <- color.pathway.by.objects( "path:eco00260", c("eco:b0002", "eco:c00263"), c("#ff0000", "#00ff00"), c("#ffff00", "yellow") )
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