API for Bioconductor/VariantExperiment
A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend
| Global functions | |
|---|---|
| .addsmpanno | Source code |
| .colDataColumns_check | Source code |
| .colDataColumns_check_msg | Source code |
| .colData_generalgds | Source code |
| .colData_seqgds | Source code |
| .colData_snpgds | Source code |
| .create_dir | Source code |
| .empty_colData_DF | Source code |
| .empty_rowData_DF | Source code |
| .get_gds_annonodes | Source code |
| .get_gds_arraynodes | Source code |
| .get_gds_fileFormat | Source code |
| .get_gdsnode_desp | Source code |
| .granges_generalgds | Source code |
| .granges_seqgds | Source code |
| .granges_snpgds | Source code |
| .infoColumns_check | Source code |
| .infoColumns_check_msg | Source code |
| .infoColumns_seqgds | Source code |
| .infonodes_val | Source code |
| .initiate_seqgds | Source code |
| .initiate_snpgds | Source code |
| .permdim | Source code |
| .rowDataColumns_check | Source code |
| .rowDataColumns_check_msg | Source code |
| .rowRanges_generalgds | Source code |
| .rowRanges_seqgds | Source code |
| .rowRanges_snpgds | Source code |
| .sampnode_seqgds_ondisk | Source code |
| .sampnode_snpgds_ondisk | Source code |
| .sampnodes_seqgds | Source code |
| .sampnodes_snpgds | Source code |
| .showAvailable_check | Source code |
| .showAvailable_check_dims | Source code |
| .showAvailable_general | Source code |
| .showAvailable_seqarray | Source code |
| .showAvailable_snparray | Source code |
| .stop_if_bad_dir | Source code |
| .validate_VariantExperiment | Source code |
| .varnode_seqgds_inmem | Source code |
| .varnode_snpgds_inmem | Source code |
| .write_ve_as_gds | Source code |
| .write_ve_as_newve | Source code |
| .write_vedata_as_gdsnode | Source code |
| VariantExperiment | Man page Source code |
| VariantExperiment-class | Man page |
| VariantExperiment-package | Man page |
| gdsfile,VariantExperiment-method | Man page |
| loadVariantExperiment | Man page Source code |
| makeVariantExperimentFromGDS | Man page Source code |
| makeVariantExperimentFromSEQGDS | Man page Source code |
| makeVariantExperimentFromSNPGDS | Man page Source code |
| makeVariantExperimentFromVCF | Man page Source code |
| saveVariantExperiment | Man page Source code |
| showAvailable | Man page Source code |
