VariantExperiment-package: VariantExperiment: A package to represent VCF / GDS files...
In Bioconductor/VariantExperiment: A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend
VariantExperiment-package R Documentation
VariantExperiment: A package to represent VCF / GDS files using standard SummarizedExperiment metaphor with on-disk representation.
Description
The package VariantExperiment takes GDS file or VCF file as input, and save them in VariantExperiment object. Assay data are saved in GDSArray objects and annotation data are saved in DelayedDataFrame format, both of which remain on-disk until needed. Common manipulations like subsetting, mathematical transformation and statistical analysis are done easily and quickly in _R_.
Author(s)
Maintainer: Qian Liu Qian.Liu@roswellpark.org
Authors:
Herv<U+00E9> Pag<U+00E8>s
Martin Morgan
See Also
Useful links:
Bioconductor/VariantExperiment documentation built on Nov. 3, 2024, 8:11 a.m.
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| VariantExperiment-package | R Documentation |
VariantExperiment: A package to represent VCF / GDS files using standard SummarizedExperiment metaphor with on-disk representation.
Description
The package VariantExperiment takes GDS file or VCF file as input, and save them in VariantExperiment object. Assay data are saved in GDSArray objects and annotation data are saved in DelayedDataFrame format, both of which remain on-disk until needed. Common manipulations like subsetting, mathematical transformation and statistical analysis are done easily and quickly in _R_.
Author(s)
Maintainer: Qian Liu Qian.Liu@roswellpark.org
Authors:
Herv<U+00E9> Pag<U+00E8>s
Martin Morgan
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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