loadVariantExperiment: loadVariantExperiment to load the GDS back-end...

In Bioconductor/VariantExperiment: A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend

loadVariantExperiment to load the GDS back-end SummarizedExperiment object into R console.

Description

loadVariantExperiment to load the GDS back-end SummarizedExperiment object into R console.

Usage

loadVariantExperiment(dir = tempdir())

Arguments

dir	The directory to save the gds format of the array data, and the newly generated SummarizedExperiment object with array data in GDSArray format.

Value

An VariantExperiment object.

Examples

gds <- SeqArray::seqExampleFileName("gds")
## ve <- makeVariantExperimentFromGDS(gds)
## ve1 <- subsetByOverlaps(ve, GRanges("22:1-48958933"))
aa <- tempfile()
## saveVariantExperiment(ve1, dir=aa, replace=TRUE)
## loadVariantExperiment(dir = aa)

Bioconductor/VariantExperiment documentation built on April 20, 2024, 3:02 p.m.