Bioconductor/annotate
Annotation for microarrays

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280
Source code
25
Man pages
58
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Bioconductor/annotate: Annotation for microarrays
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API

API for Bioconductor/annotate
Annotation for microarrays

Global functions
.blastSequencesToDNAMultipleAlignment Source code
.blastSequencesToDataFrame Source code
.buildAnnotateOpts Source code
.defineBaseSelectSQL Source code
.efetch Source code
.getIdTag Source code
.getNcbiURL Source code
.handleXML Source code
.isMissingGOEntry Source code
.onLoad Source code
.setDefaultRepositories Source code
.test Source code
.transformAccession Source code
.tryParseResult Source code
ACC2homology Man page Source code
ACCNUMStats Man page Source code
FramedHTMLPage Man page
FramedHTMLPage,HTMLPage-method Man page
FramedHTMLPage-class Man page
GO2heatmap Man page Source code
GOmnplot Man page
HGID2homology Man page Source code
HTMLPage Man page
HTMLPage,HTMLPage-method Man page
HTMLPage-class Man page
KEGG2heatmap Man page
KEGG2heatmap,character,eSet,character-method Man page
KEGG2heatmap,character,matrix,character-method Man page
KEGGmnplot Man page
KEGGmnplot,character,eSet,character-method Man page
KEGGmnplot,character,matrix,character-method Man page
LL2homology Man page Source code
PMIDAmat Man page Source code
PWAmat Man page Source code
UniGeneQuery Man page Source code
abstText Man page
abstText,pubMedAbst-method Man page
accessionToUID Man page Source code
allValidKeys Man page
allValidKeys,OrgDb-method Man page
allValidKeys,character-method Man page
annObjPrefix Source code
annPkgName Man page Source code
aqListGOIDs Man page Source code
articleTitle Man page
articleTitle,pubMedAbst-method Man page
authors Man page
authors,pubMedAbst-method Man page
blastSequences Man page Source code
buildChromLocation Man page Source code
buildPubMedAbst Man page Source code
checkArgs Man page Source code
chrCats Man page Source code
chromInfo Man page
chromInfo,chromLocation-method Man page
chromLengths Man page
chromLengths,chromLocation-method Man page
chromLocation Man page
chromLocation-class Man page
chromLocs Man page
chromLocs,chromLocation-method Man page
chromNames Man page
chromNames,chromLocation-method Man page
clearRepository Man page Source code
compatibleVersions Man page Source code
createLLChrCats Man page Source code
createMAPIncMat Man page Source code
dataSource Man page
dataSource,chromLocation-method Man page
dropECode Man page Source code
entrezGeneByID Man page Source code
entrezGeneQuery Man page Source code
fileName Man page
fileName,HTMLPage-method Man page
filterGOByOntology Man page Source code
findChr4LL Man page Source code
findNeighbors Man page Source code
genbank Man page Source code
geneSymbols Man page
geneSymbols,chromLocation-method Man page
getAnnMap Man page Source code
getBoundary Man page Source code
getCells Man page Source code
getEG Man page Source code
getEvidence Man page Source code
getGI Man page Source code
getGO Man page Source code
getGOChildren Man page Source code
getGOOntology Man page Source code
getGOParents Man page Source code
getGOTerm Man page Source code
getGOdesc Man page Source code
getGPLNames Man page Source code
getOntology Man page Source code
getOrgNameNCode Man page Source code
getPMID Man page Source code
getPMInfo Man page Source code
getQuery4Affy Man page
getQuery4EN Man page
getQuery4ENSEMBL Man page Source code
getQuery4FB Man page
getQuery4GB Man page
getQuery4GO Source code
getQuery4OMIM Man page Source code
getQuery4SP Man page Source code
getQuery4TR Man page Source code
getQuery4UG Man page
getQueryLink Man page
getRepositories Man page Source code
getSAGEFileInfo Man page Source code
getSAGEGPL Man page Source code
getSEQ Man page Source code
getSYMBOL Man page Source code
getTDRows Man page
getURL2 Source code
getUniqAnnItem Man page Source code
getValidChr Man page Source code
hasGOannote Man page Source code
hgByChroms Man page
hgCLengths Man page
hgu95AProbLocs Man page
hgu95Achroloc Man page
hgu95Achrom Man page
hgu95All Man page
hgu95Asym Man page
homoACC Man page
homoACC,homoData-method Man page
homoData Man page Source code
homoData-class Man page
homoHGID Man page
homoHGID,homoData-method Man page
homoLL Man page
homoLL,homoData-method Man page
homoOrg Man page
homoOrg,homoData-method Man page
homoPS Man page
homoPS,homoData-method Man page
homoType Man page
homoType,homoData-method Man page
homoURL Man page
homoURL,homoData-method Man page
htmlpage Man page
initialize,FramedHTMLPage-method Man page
isValidKey Man page
isValidKey,character,OrgDb-method Man page
isValidKey,character,character-method Man page
journal Man page
journal,pubMedAbst-method Man page
lookUp Man page Source code
mainPage Man page
mainPage,FramedHTMLPage-method Man page
mainPage,HTMLPage-method Man page
makeAnchor Man page Source code
mapOrgs Man page Source code
nChrom Man page
nChrom,chromLocation-method Man page
orgNameNCode Man page
organism Man page
organism,character-method Man page
organism,chromLocation-method Man page
pageText Man page
pageText,HTMLPage-method Man page
pageTitle Man page
pageTitle,HTMLPage-method Man page
pm.abstGrep Man page Source code
pm.getabst Man page Source code
pm.titles Man page
pmAbst2HTML Man page Source code
pmid Man page
pmid,pubMedAbst-method Man page
pmid2MIAME Man page
pmidQuery Man page Source code
probesToChrom Man page
probesToChrom,chromLocation-method Man page
pubDate Man page
pubDate,pubMedAbst-method Man page
pubMedAbst Man page
pubMedAbst,pubMedAbst-method Man page
pubMedAbst-class Man page
pubmed Man page Source code
readGEOAnn Man page Source code
readIDNAcc Man page Source code
readUrl Man page Source code
serializeDataPkgEnvs Man page Source code
serializeEnv Man page Source code
setRepository Man page Source code
show Man page
show,FramedHTMLPage-method Man page
show,HTMLPage-method Man page
show,chromLocation-method Man page
show,homoData-method Man page
show,pubMedAbst-method Man page
sidePage Man page
sidePage,FramedHTMLPage-method Man page
sidePage,HTMLPage-method Man page
toFile Man page
toFile,FramedHTMLPage-method Man page
toFile,HTMLPage-method Man page
topPage Man page
topPage,FramedHTMLPage-method Man page
topPage,HTMLPage-method Man page
updateSymbolsToValidKeys Man page Source code
usedChromGenes Man page Source code
weightByConfi Man page Source code
whatACC Man page Source code
Bioconductor/annotate documentation built on Nov. 2, 2024, 4:40 p.m.

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