getPMInfo: extract publication details and abstract from...
In Bioconductor/annotate: Annotation for microarrays
getPMInfo R Documentation
extract publication details and abstract from annotate::pubmed function output
Description
extract publication details and abstract from annotate::pubmed function output
Usage
getPMInfo(x)
Arguments
x
an object of class xmlDocument; assumed to be result of a pubmed() call
Details
uses xmlDOMApply to extract and structure key features of the XML tree returned
by annotate::pubmed()
Value
a list with one element per pubmed id processed by pubmed. Each element of
the list is in turn a list with elements for author list, title, journal
info, and abstract text.
Note
this should be turned into a method returning an instance of
a formal class representing articles.
Author(s)
Vince Carey <stvjc@channing.harvard.edu>
Examples
demo <- pubmed("11780146",
"11886385", "11884611")
getPMInfo(demo)
Bioconductor/annotate documentation built on Feb. 11, 2024, 8:19 p.m.
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| getPMInfo | R Documentation |
extract publication details and abstract from annotate::pubmed function output
Description
extract publication details and abstract from annotate::pubmed function output
Usage
getPMInfo(x)
Arguments
x |
an object of class xmlDocument; assumed to be result of a pubmed() call |
Details
uses xmlDOMApply to extract and structure key features of the XML tree returned by annotate::pubmed()
Value
a list with one element per pubmed id processed by pubmed. Each element of the list is in turn a list with elements for author list, title, journal info, and abstract text.
Note
this should be turned into a method returning an instance of a formal class representing articles.
Author(s)
Vince Carey <stvjc@channing.harvard.edu>
Examples
demo <- pubmed("11780146",
"11886385", "11884611")
getPMInfo(demo)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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